Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3307150
Chromosome
11
Strand
+
Start-stop positions
57761862-57816308
Nucleic length (bp)
3093
Sequences
Nucleic sequence
GTG ...
Amino acid sequence
VLD ...
Spliced: Yes
Exons
19
Exons start-end
57761862-57762046
57789037-57789155
57791492-57791673
57794010-57794081
57795577-57795729
57796457-57796992
57801733-57802196
57803621-57803804
57804663-57804780
57805882-57806035
57806915-57806983
57808165-57808292
57808390-57808540
57809274-57809466
57810109-57810223
57811399-57811486
57814311-57814373
57815394-57815500
57816297-57816308
Genome browsers
Aliases
OVERLAPPING_GENES_CTNND1_to_RP11-691N7.6_chr11
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3307121 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
Export data