Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3306415
Chromosome
11
Strand
+
Start-stop positions
43312110-43342510
Nucleic length (bp)
1593
Sequences
Nucleic sequence
CTG ...
Amino acid sequence
LGL ...
Spliced: Yes
Exons
14
Exons start-end
43312110-43312196
43318640-43318801
43320821-43320914
43321411-43321476
43321985-43322136
43323430-43323636
43326507-43326611
43327789-43327878
43328712-43328893
43329965-43330058
43330508-43330564
43335278-43335354
43335858-43335994
43342428-43342510
Genome browsers
ID
Aliases
AAC-11
AAC11,
API5,
API5L1
ENSG00000166181,
HGNC:594,
NCBI:8539
OFF:API5
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3306401 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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