Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3306229
Chromosome
11
Strand
+
Start-stop positions
34108226-34146192
Nucleic length (bp)
3078
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MHR ...
Spliced: Yes
Exons
28
Exons start-end
34108226-34108333
34108742-34108833
34112052-34112223
34113716-34113838
34115823-34115884
34118180-34118294
34118396-34118503
34122459-34122592
34123762-34123855
34124302-34124400
34127463-34127599
34130813-34130937
34131381-34131531
34132125-34132221
34133026-34133142
34134319-34134420
34134512-34134586
34135175-34135291
34136642-34136775
34136978-34137026
34139191-34139287
34139385-34139495
34140400-34140572
34141089-34141208
34141719-34141817
34142275-34142348
34143445-34143528
34146084-34146192
Genome browsers
ID
Aliases
ENSG00000135372
FLJ10774,
FLJ12179,
hALP
HGNC:29830,
KIAA1709,
Kre33
NAT10,
NCBI:55226,
NET43
OFF:NAT10
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3306227 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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