Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3306220
Chromosome
11
Strand
+
Start-stop positions
34052421-34097781
Nucleic length (bp)
2085
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MPS ...
Spliced: Yes
Exons
17
Exons start-end
34052421-34052636
34071726-34071788
34071901-34071987
34076236-34076474
34076560-34076642
34079628-34079765
34082825-34082877
34082955-34083041
34086064-34086219
34086305-34086413
34089395-34089456
34090179-34090289
34090529-34090678
34091906-34092056
34096479-34096673
34097196-34097296
34097698-34097781
Genome browsers
ID
Aliases
caprin-1
CAPRIN1,
ENSG00000135387,
GPIAP1
HGNC:6743,
M11S1,
NCBI:4076
OFF:CAPRIN1,
RNG105
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3306215 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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