Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3306139
Chromosome
11
Strand
+
Start-stop positions
32583888-32602399
Nucleic length (bp)
1125
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MSV ...
Spliced: Yes
Exons
11
Exons start-end
32583888-32583929
32587012-32587144
32588594-32588732
32589012-32589135
32589547-32589641
32593866-32593949
32594914-32595013
32595966-32596047
32600689-32600832
32601762-32601822
32602279-32602399
Genome browsers
ID
Aliases
eIF3m
EIF3M,
ENSG00000149100,
FLJ29030
GA17,
hfl-B5,
HGNC:24460
NCBI:10480,
OFF:EIF3M,
PCID1
TANGO7
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3306116 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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