Open Reading Frame (ORF)
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ORF
ID CARD
MetamORF ID
3305980
Chromosome
11
Strand
+
Start-stop positions
20387720-20508413
Nucleic length (bp)
1623
Sequences
Nucleic sequence
ACG ...
Amino acid sequence
TPG ...
Spliced: Yes
Exons
16
Exons start-end
20387720-20387774
20388019-20388154
20389744-20389826
20392211-20392260
20392897-20392999
20395803-20395962
20397577-20397721
20402919-20402984
20407911-20408032
20426766-20426865
20452130-20452208
20461980-20462167
20464460-20464546
20493919-20493969
20494167-20494254
20508304-20508413
Genome browsers
ID
Aliases
ENSG00000185238
HGNC:30163,
HRMT1L3,
NCBI:10196
OFF:PRMT3,
PRMT3
Transcripts
1 unknown transcript
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
3305975 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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