Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3305650
Chromosome
11
Strand
+
Start-stop positions
11842186-11956175
Nucleic length (bp)
4128
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MVP ...
Spliced: Yes
Exons
29
Exons start-end
11842186-11842224
11873800-11873859
11880177-11880380
11884467-11884580
11891968-11892106
11897597-11897693
11902715-11902860
11903263-11903342
11905399-11905548
11920156-11920251
11920342-11920494
11922724-11922891
11929434-11929565
11930044-11930120
11930696-11930751
11933004-11933116
11933831-11933935
11936303-11936510
11938257-11938372
11940429-11940548
11942335-11943112
11947945-11948120
11948478-11948558
11949889-11950004
11950364-11950482
11952741-11952871
11954897-11954944
11955034-11955164
11956001-11956175
Genome browsers
Transcripts
1 known transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Gene ID
The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes. |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 633901 | ENST00000527733 | protein_coding | HGNC:20076 | - |
Ribo-seq |
1 |
Johnstone2016
|
|
Brain_tumor,
HEK293, HeLa, HFF |
||
| 3305645 | UNKNOWN_TRANSCRIPT | HGNC:20076 | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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