Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3305185
Chromosome
11
Strand
+
Start-stop positions
4095013-4138383
Nucleic length (bp)
2379
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MHV ...
Spliced: Yes
Exons
19
Exons start-end
4095013-4095031
4101993-4102081
4106046-4106223
4107435-4107535
4109644-4109703
4111601-4111640
4111900-4112062
4118320-4118461
4119845-4119928
4121604-4121765
4122141-4122220
4123183-4123384
4126684-4126833
4127035-4127256
4129074-4129150
4132286-4132421
4133563-4133658
4135082-4135270
4138195-4138383
Genome browsers
ID
Aliases
ENSG00000167325
HGNC:10451,
NCBI:6240,
OFF:RRM1
RRM1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3305165 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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