Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3304246
Chromosome
10
Strand
-
Start-stop positions
119831474-119872755
Nucleic length (bp)
2094
Sequences
Nucleic sequence
CTG ...
Amino acid sequence
LRR ...
Spliced: Yes
Exons
16
Exons start-end
119872755-119872527
119859884-119859799
119859181-119859041
119858925-119858884
119857439-119857338
119853194-119853050
119849576-119849425
119847713-119847613
119843426-119843254
119842595-119842472
119840960-119840843
119838700-119838535
119837029-119836896
119835704-119835540
119832100-119832012
119831600-119831474
Genome browsers
ID
Aliases
C10orf119
ENSG00000197771,
FLJ13081,
HGNC:25782
MCM-BP,
MCMBP,
NCBI:79892
OFF:MCMBP
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3304247 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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