Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3304012
Chromosome
10
Strand
-
Start-stop positions
109865184-109923433
Nucleic length (bp)
2001
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAA ...
Spliced: Yes
Exons
21
Exons start-end
109923433-109923402
109915099-109915011
109907815-109907691
109893075-109893012
109891826-109891722
109888595-109888503
109888192-109888049
109886341-109886246
109884148-109884067
109882642-109882432
109880931-109880842
109880238-109880188
109878058-109878000
109877867-109877790
109875599-109875528
109873427-109873367
109871861-109871792
109870904-109870731
109870029-109869953
109868712-109868614
109865312-109865184
Genome browsers
ID
Aliases
ENSG00000108039
HGNC:12822,
NCBI:7511,
OFF:XPNPEP1
XPNPEP,
XPNPEP1,
XPNPEPL
XPNPEPL1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3304013 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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