ORF 3303910 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3303910

Chromosome

Strand

Start-stop positions

103089672-103174958

Nucleic length (bp)

1686

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MST ...

Spliced: Yes

Exons

Exons start-end

103174958-103174858
103139479-103139406
103106706-103106589
103105801-103105706
103101326-103101235
103101102-103101045
103100019-103099926
103098984-103098931
103097374-103097291
103095980-103095939
103094455-103094348
103094038-103093972
103093309-103093139
103091615-103091564
103090996-103090936
103090787-103090611
103089908-103089672

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3610468	ENST00000404739	protein_coding	HGNC:8022	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3303911	UNKNOWN_TRANSCRIPT		HGNC:8022	-	Ribo-seq			1	Erhard2018		HFF

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