Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3303718
Chromosome
10
Strand
-
Start-stop positions
100487616-100516952
Nucleic length (bp)
3540
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MKL ...
Spliced: Yes
Exons
25
Exons start-end
100516952-100516874
100516219-100516096
100509511-100509316
100509102-100509007
100508051-100507908
100507567-100507425
100506420-100506321
100506201-100506040
100505495-100505361
100502484-100502254
100499598-100499524
100499258-100499160
100498804-100498705
100498207-100498029
100497793-100497667
100497280-100497135
100496431-100496258
100495546-100495385
100490883-100490706
100490322-100490008
100489761-100489703
100489398-100489252
100488974-100488858
100488098-100488027
100487795-100487616
Genome browsers
Aliases
OVERLAPPING_GENES_SEC31B_to_NDUFB8_chr10
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3303719 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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