Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3303562
Chromosome
10
Strand
-
Start-stop positions
97458692-97498384
Nucleic length (bp)
3093
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAA ...
Spliced: Yes
Exons
31
Exons start-end
97498384-97498273
97484151-97484103
97481042-97480942
97478389-97478304
97477929-97477855
97477416-97477347
97476963-97476835
97476744-97476683
97470861-97470775
97470203-97470129
97469723-97469646
97469104-97468966
97468406-97468252
97467583-97467505
97466901-97466776
97466585-97466504
97466159-97466059
97465954-97465805
97464013-97463858
97462682-97462583
97462119-97462017
97461896-97461828
97461622-97461496
97461007-97460907
97460751-97460695
97460232-97460046
97459741-97459659
97459526-97459362
97459282-97459223
97458900-97458800
97458719-97458692
Genome browsers
Transcripts
1 known transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Gene ID
The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes. |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 4530338 | ENST00000327238 | protein_coding | HGNC:13824 | - |
Ribo-seq |
1 |
Johnstone2016
|
|
Brain_tumor,
HEK293, HeLa, HFF |
||
| 3303563 | UNKNOWN_TRANSCRIPT | HGNC:13824 | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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