ORF 3303430 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3303430

Chromosome

Strand

Start-stop positions

94334177-94362838

Nucleic length (bp)

2403

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MKA ...

Spliced: Yes

Exons

Exons start-end

94362838-94362830
94361872-94361665
94358215-94358083
94357331-94357174
94356591-94356535
94355093-94354963
94353057-94352896
94352403-94352310
94350288-94350113
94349378-94349250
94346556-94346425
94344933-94344853
94344515-94344415
94341745-94341673
94340496-94340433
94340347-94340276
94339920-94339739
94338736-94338608
94337874-94337777
94334718-94334634
94334305-94334177

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3303428	UNKNOWN_TRANSCRIPT		HGNC:24034	-	Ribo-seq			1	Erhard2018		HFF
1575	ENST00000371361	protein_coding	HGNC:24034	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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