Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3303427
Chromosome
10
Strand
-
Start-stop positions
94315447-94352967
Nucleic length (bp)
1506
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MEL ...
Spliced: Yes
Exons
15
Exons start-end
94352967-94352896
94352403-94352310
94350288-94350113
94349378-94349250
94346556-94346425
94344933-94344853
94344515-94344415
94341745-94341673
94340496-94340433
94340347-94340276
94339920-94339739
94338736-94338608
94337874-94337777
94334718-94334634
94315464-94315447
Genome browsers
ID
Aliases
AD24
C10orf117,
ENSG00000173145,
FAD24
FLJ12820,
HGNC:24034,
NCBI:64318
NOC3L,
OFF:NOC3L
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3303428 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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