ORF 3303385 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3303385

Chromosome

Strand

Start-stop positions

92454444-92574019

Nucleic length (bp)

3060

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MRY ...

Spliced: Yes

Exons

Exons start-end

92574019-92573922
92537550-92537366
92534785-92534578
92531917-92531748
92515042-92514920
92510162-92510050
92508890-92508728
92508205-92508113
92507666-92507575
92506522-92506442
92504897-92504794
92490595-92490493
92487318-92487196
92483337-92483255
92479421-92479277
92475994-92475884
92474961-92474841
92470345-92470254
92468990-92468879
92465843-92465676
92464003-92463731
92461252-92461191
92456431-92456359
92455643-92455576
92454539-92454444

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3303386	UNKNOWN_TRANSCRIPT		HGNC:5381	-	Ribo-seq			1	Erhard2018		HFF
281396	ENST00000265986	protein_coding	HGNC:5381	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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