ORF 3302893 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3302893

Chromosome

Strand

Start-stop positions

71817441-71851221

Nucleic length (bp)

1581

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MYA ...

Spliced: Yes

Exons

Exons start-end

71851221-71851182
71834505-71834372
71831920-71831846
71831251-71831126
71829077-71828877
71828157-71828014
71825893-71825837
71822013-71821876
71820335-71820240
71819900-71819714
71819622-71819465
71819111-71819031
71818724-71818617
71817476-71817441

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1321	ENST00000610929	protein_coding	HGNC:9498	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3302891	UNKNOWN_TRANSCRIPT		HGNC:9498	-	Ribo-seq			1	Erhard2018		HFF

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