Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3301507
Chromosome
10
Strand
-
Start-stop positions
7756080-7787951
Nucleic length (bp)
1200
Sequences
Nucleic sequence
ATC ...
Amino acid sequence
IAA ...
Spliced: Yes
Exons
13
Exons start-end
7787951-7787820
7783175-7783081
7780307-7780264
7780178-7780056
7779019-7778838
7775799-7775751
7774891-7774831
7769345-7769216
7766103-7766053
7763791-7763723
7762556-7762457
7759990-7759890
7756142-7756080
Genome browsers
ID
Aliases
ENSG00000151657
HGNC:6327,
KIN,
KIN17
NCBI:22944,
OFF:KIN,
Rts2
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3301505 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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