ORF 3301279 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3301279

Chromosome

Strand

Start-stop positions

133391089-133420165

Nucleic length (bp)

1020

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MDT ...

Spliced: Yes

Exons

Exons start-end

133391089-133391098
133391312-133391428
133395713-133395777
133396163-133396267
133398435-133398515
133399170-133399226
133399529-133399619
133401529-133401590
133402149-133402245
133402692-133402773
133419480-133419592
133420026-133420165

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3301280	UNKNOWN_TRANSCRIPT		OVERLAPPING_GENES_MTG1_to_RP11-108K14.8_chr10	-	Ribo-seq			1	Erhard2018		HFF
3753977	ENST00000468317	protein_coding	ENSG00000254536	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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