Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3300940
Chromosome
10
Strand
+
Start-stop positions
119892783-119933767
Nucleic length (bp)
3003
Sequences
Nucleic sequence
ATG ...
Amino acid sequence
MAE ...
Spliced: Yes
Exons
18
Exons start-end
119892783-119892945
119898427-119898959
119902799-119903009
119904084-119904277
119909041-119909130
119912044-119912164
119914730-119914819
119915748-119915889
119917836-119918044
119918393-119918511
119919444-119919596
119920889-119920984
119926036-119926227
119929607-119929762
119930329-119930431
119932133-119932318
119933005-119933167
119933686-119933767
Genome browsers
ID
Aliases
ENSG00000107651
HGNC:17018,
NCBI:11196,
OFF:SEC23IP
p125,
SEC23IP
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 892529 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
Export data