Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3300742
Chromosome
10
Strand
+
Start-stop positions
112950733-113165634
Nucleic length (bp)
1494
Sequences
Nucleic sequence
TTG ...
Amino acid sequence
LLL ...
Spliced: Yes
Exons
13
Exons start-end
112950733-112950945
112951207-112951273
112951483-112951607
113040025-113040126
113089400-113089540
113141184-113141316
113143923-113144025
113146011-113146097
113150998-113151123
113151725-113151884
113152333-113152440
113158021-113158069
113165555-113165634
Genome browsers
ID
Aliases
ENSG00000148737
HGNC:11641,
NCBI:6934,
OFF:TCF7L2
TCF-4,
TCF4,
TCF7L2
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3300725 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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