Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3300679
Chromosome
10
Strand
+
Start-stop positions
110567757-110604302
Nucleic length (bp)
3714
Sequences
Nucleic sequence
CTG ...
Amino acid sequence
LRP ...
Spliced: Yes
Exons
29
Exons start-end
110567757-110567831
110568938-110569013
110573707-110573745
110575336-110575403
110577421-110577492
110577835-110577914
110578628-110578706
110580904-110581021
110581923-110582098
110582562-110582642
110583384-110583548
110583841-110583962
110584183-110584396
110589605-110589708
110589892-110589991
110590412-110590572
110590991-110591132
110593073-110593223
110596398-110596550
110598139-110598290
110599654-110599812
110600439-110600546
110601022-110601130
110601637-110601884
110601966-110602178
110602474-110602665
110602825-110603002
110603184-110603290
110604231-110604302
Genome browsers
ID
Aliases
BAM
bamacan,
CSPG6,
ENSG00000108055
HCAP,
HGNC:2468,
NCBI:9126
OFF:SMC3,
SMC3,
SMC3L1
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 3300680 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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