ORF 3300604 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3300604

Chromosome

Strand

Start-stop positions

103967746-104025720

Nucleic length (bp)

3708

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MSF ...

Spliced: Yes

Exons

Exons start-end

103967746-103967895
103990675-103990839
103992598-103992646
103992984-103993133
103998899-103998971
103999119-103999313
103999867-103999948
104001444-104001572
104002172-104003527
104005561-104005691
104005912-104006035
104008177-104008356
104010816-104010908
104018160-104018289
104018784-104018908
104019734-104019922
104020488-104020613
104021620-104021733
104025574-104025720

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3614840	ENST00000335753	protein_coding	HGNC:11088	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
403783	UNKNOWN_TRANSCRIPT		HGNC:11088	-	Ribo-seq			1	Erhard2018		HFF

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