Open Reading Frame (ORF)
ORF
ID CARD
MetamORF ID
3300016
Chromosome
10
Strand
+
Start-stop positions
92593298-92653796
Nucleic length (bp)
3249
Sequences
Nucleic sequence
CTG ...
Amino acid sequence
LSA ...
Spliced: Yes
Exons
22
Exons start-end
92593298-92593452
92606265-92606397
92606619-92606716
92607159-92607237
92609020-92609205
92609385-92609509
92613040-92613130
92613377-92613619
92616737-92616832
92621385-92621473
92628808-92628895
92630176-92630364
92632486-92632693
92633623-92633795
92637184-92637309
92637387-92637545
92639794-92639900
92645363-92645642
92648212-92648434
92649835-92649986
92650401-92650517
92653665-92653796
Genome browsers
ID
Aliases
Eg5
ENSG00000138160,
HGNC:6388,
HKSP
KIF11,
KNSL1,
NCBI:3832
OFF:KIF11,
TRIP5
Transcripts
1 unknown transcript
|
MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference. |
Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565). |
Transcript biotype
The biotype of the transcript (as defined by Ensembl). |
Relative positions The relative positions of the start and stop codons of the ORF on the transcript. |
Identification
The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this. |
Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon. |
Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use. |
Exp. count The number of original datasets that identifed the ORF on the transcript. |
Data sources
The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs. |
ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use. |
Cell types
A comma-separated list of the cell types in which the ORF has already been identified on the transcript. |
| 403774 | UNKNOWN_TRANSCRIPT | - |
Ribo-seq |
1 |
Erhard2018
|
|
HFF
|
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