ORF 3298306 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3298306

Chromosome

Strand

Start-stop positions

13164203-13209310

Nucleic length (bp)

2628

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MDE ...

Spliced: Yes

Exons

Exons start-end

13164203-13164209
13170922-13171263
13172376-13172480
13172625-13172765
13175510-13175681
13180442-13180607
13182933-13183100
13186164-13186280
13188881-13189080
13191299-13191399
13192255-13192365
13192451-13192568
13195041-13195269
13197623-13197767
13198689-13198807
13201421-13201534
13204219-13204364
13209091-13209133
13209227-13209310

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3745056	ENST00000484800	protein_coding	HGNC:18043	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
3298301	UNKNOWN_TRANSCRIPT		HGNC:18043	-	Ribo-seq			1	Erhard2018		HFF

Export data