ORF 3298270 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3298270

Chromosome

Strand

Start-stop positions

12196246-12250337

Nucleic length (bp)

1011

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MKK ...

Spliced: Yes

Exons

Exons start-end

12196246-12196319
12198705-12198776
12209967-12210024
12210290-12210322
12215740-12215835
12217361-12217467
12230948-12230996
12235048-12235123
12237144-12237266
12238457-12238485
12246149-12246277
12249581-12249718
12250311-12250337

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
94575	ENST00000378900	protein_coding	HGNC:16827	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
892342	UNKNOWN_TRANSCRIPT		HGNC:16827	-	Ribo-seq			1	Erhard2018		HFF

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