ORF 3298231 | MetamORF

Open Reading Frame (ORF)

ORF

ID CARD

MetamORF ID

3298231

Chromosome

Strand

Start-stop positions

12069034-12120888

Nucleic length (bp)

2760

Sequences

Nucleic sequence

ATG ...

Amino acid sequence

MAS ...

Spliced: Yes

Exons

Exons start-end

12069034-12069187
12081472-12081627
12084540-12084751
12087535-12087729
12088986-12089255
12091513-12091684
12094073-12094271
12097684-12097996
12100178-12100262
12101042-12101181
12106246-12106396
12107909-12108015
12112900-12113064
12117673-12117755
12118749-12118918
12120182-12120267
12120787-12120888

Genome browsers

UCSC

Transcripts

1 known transcript

MetamORF transcript ID The MetamORF ID of the transcript. This is an arbitrary ID that does not correspond to any official (Ensembl, NCBI...) transcript ID or external reference.	Transcript ID The official transcript ID (usually an Ensembl ID, e.g. ENST00000395565).	Transcript biotype The biotype of the transcript (as defined by Ensembl).	Gene ID The gene ID. Usually the HGNC ID for H. sapiens genes and the NCBI ID for M. musculus genes.	Relative positions The relative positions of the start and stop codons of the ORF on the transcript.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start flanking sequence The sequence flanking the start codon of the ORF on the transcript. This sequence registered the nucleotides from -6 to +4 positions, where +1 corresponds to the first nucleotide of the ORF start codon.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3298220	UNKNOWN_TRANSCRIPT		HGNC:23537	-	Ribo-seq			1	Erhard2018		HFF
893402	ENST00000263035	protein_coding	HGNC:23537	-	Ribo-seq			1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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