Transcript 62 | MetamORF

Transcript

ID CARD

MetamORF ID

ENSMUST00000197847

Name

Slc30a7-203

Strand

Biotype

processed_transcript

Start-end positions

115984857-115992731

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:66500

Aliases

1810059J10Rik,
2610034N15Rik, 4833428C12Rik, AI467242,
ENSMUSG00000054414, MGI:1913750, NCBI:66500,
OFF:Slc30a7, Slc30a7, ZnT-7,
ZnT7, Zntl2

Chr 3

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1552355	48	TTG ...	LIF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1425723	144	GTG ...	VHH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
750450	75	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
17141	48	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
134976	126	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
538532	54	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
61	36	ATG ...	MEV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Skin_tumor, Spleen_B_cell
1423913	159	TTG ...	LAP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver

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