Metam
ORF

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Transcript

ID CARD

MetamORF ID

128381

ID

ENSMUST00000067485

Name

Slc30a7-201

Strand

-

Biotype

protein_coding

Start-end positions

115938973-116007406

CDS Start-stop positions

115946664-116007214

CDS Relative positions

-

Sequences

Transcript sequence

AGG ...

Gene

ID

NCBI:66500

Aliases

1810059J10Rik,
2610034N15Rik, 4833428C12Rik, AI467242,
ENSMUSG00000054414, MGI:1913750, NCBI:66500,
OFF:Slc30a7, Slc30a7, ZnT-7,
ZnT7, Zntl2


Chr 3

ORFs

26 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1221680 216

AAG ...

KYW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1731051 207

GTG ...

VFQ ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    CDS
    sORF
MEF, R1E
1646333 51

ATG ...

MCT ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1223599 81

ATT ...

IPT ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
134018 48

ATG ...

MLE ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
1646512 51

ATG ...

MYR ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1650437 99

GTG ...

VPE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1648269 54

TTG ...

LWN ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1730986 210

CTG ...

LVF ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    CDS
    sORF
MEF, R1E
1175563 129

TTG ...

LIV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
143786 54

ATG ...

MGM ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
1648109 42

TTG ...

LTL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
MEF
1464293 81

TTG ...

LFS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1651445 174

CTG ...

LLA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
895557 162

ATC ...

IIA ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
143706 39

TTG ...

LWN ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
MEF
17141 48

TTG ...

LFS ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil
506820 111

TTG ...

LKR ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
B_cell, BMDC, E14,
Spleen_B_cell
893675 51

ATA ...

IQT ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1651574 156

CTG ...

LYR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
61 36

ATG ...

MEV ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF
895591 120

CTG ...

LPY ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, v6-5
1464416 69

ATG ...

MEV ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC
1647682 36

TTG ...

LRQ ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
MEF
1175433 93

CTG ...

LLF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
142517 69

ATG ...

MTL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, v6-5

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5