Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

63

ID

ENST00000474934

Name

RPS6KA1-207

Strand

+

Biotype

retained_intron

Start-end positions

26551446-26554135

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

AAA ...

Gene

ID

HGNC:10430

Aliases

ENSG00000117676,
HGNC:10430, HU-1, NCBI:6195,
OFF:RPS6KA1, p90Rsk, RPS6KA1,
RSK1


Chr 1

ORFs

15 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

895991 33

ATC ...

IIY ...

Ribo-seq
ATC moderate 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
895965 81

TCC ...

SRP ...

Ribo-seq
TCC 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
99077 48

CTG ...

LHS ...

Ribo-seq
CTG weak 12 sORFs_org_Human
    Intronic
    sORF
Blood, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
THP-1, U2OS
632850 48

CTG ...

LRG ...

Ribo-seq
CTG 4 sORFs_org_Human
    Intronic
    sORF
Blood, hES, THP-1
895969 78

CTG ...

LSW ...

Ribo-seq
CTG weak 5 sORFs_org_Human
    Intronic
    sORF
Blood, HeLa, Jurkat,
MDA-MB-231
895981 60

TGG ...

WIT ...

Ribo-seq
TGG moderate 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
99066 111

GTG ...

VMF ...

Ribo-seq
GTG moderate 8 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
99068 90

GTG ...

VKF ...

Ribo-seq
GTG moderate 8 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
62 57

CTG ...

LDH ...

Ribo-seq
CTG strong 14 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1,
THP-1, U2OS
895975 63

GCT ...

AGS ...

Ribo-seq
GCT moderate 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
632848 57

CTG ...

LDF ...

Ribo-seq
CTG 4 sORFs_org_Human
    Intronic
    sORF
HeLa, hES, THP-1
99074 63

CTG ...

LGL ...

Ribo-seq
CTG strong 12 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
99079 39

CTG ...

LGI ...

Ribo-seq
CTG strong 14 sORFs_org_Human
    Intronic
    sORF
Blood, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1, THP-1, U2OS
99070 78

CTG ...

LAE ...

Ribo-seq
CTG moderate 10 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS
99072 69

CTG ...

LAL ...

Ribo-seq
CTG strong 10 sORFs_org_Human
    Intronic
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, THP-1,
U2OS

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS